Transform and Cleanse Ignores Distinct Clause in Query

I attempted to use Transform and Cleanse to add a calculated column to data that I queried.

STAND SECTION SETN ST_POSITION ROLLID
0 PLAIN 1 BOTTOM 90245
0 PLAIN 1 TOP 90940
0 PLAIN 2 BOTTOM 80258
0 PLAIN 2 TOP 80799

I need to create a new table that contains STAND, SECTION, SETN and the new calculated column which is a NVARCHAR that consists of SECTION + 'another string'; I modified the original query to provide distinct values.

SELECT DISTINCT ROLL_LIST.STAND, ROLL_LIST.SECTION, ROLL_LIST.SETN
FROM GSL_PI_DEV.PISystem.ROLL_LIST ROLL_LIST
WHERE (ROLL_LIST.STAND IS NOT NULL)
AND (ROLL_LIST.SECTION IS NOT NULL)
AND (ROLL_LIST.SETN IS NOT NULL)
ORDER BY ROLL_LIST.STAND ASC, ROLL_LIST.SECTION ASC, ROLL_LIST.SETN ASC

It produced this result set:

STAND SECTION SETN
0 PLAIN 1
0 PLAIN 2
0 PLAIN 3
0 PLAIN 4

I sent the results to Transform and Cleanse (T&C). I added the calculated column. However, when I exported the transformed data set to Excel, the spreadsheet contained duplicate rows. Essentially, T&C ignored the DISTINCT query and produced the results for the original (non-distinct) dataset.

Did I miss something when working with T&C?

I repeated this process again but instead of using DISTINCT I grouped by the three columns that I wanted:

SELECT ROLL_LIST.STAND, ROLL_LIST.SECTION, ROLL_LIST.SETN
FROM GSL_PI_DEV.PISystem.ROLL_LIST ROLL_LIST
WHERE (ROLL_LIST.STAND IS NOT NULL)
AND (ROLL_LIST.SECTION IS NOT NULL)
AND (ROLL_LIST.SETN IS NOT NULL)
GROUP BY ROLL_LIST.STAND, ROLL_LIST.SECTION, ROLL_LIST.SETN
ORDER BY ROLL_LIST.STAND ASC, ROLL_LIST.SECTION ASC, ROLL_LIST.SETN ASC

I used T&C to create the calculated column and this time when I exported, the file contained only the rows shown in the result set.

In order to use DISTINCT in the first query, I edited the query in Toad Data Point's query builder and "visualized it" back to the diagram. I couldn't find the change in the diagram so potentially, T&C referenced the diagram and recreated the result set when it exported the transformed information.

STAND SECTION SETN ROLLSET
0 PLAIN 1 PLAIN
0 PLAIN 2 PLAIN
0 PLAIN 3 PLAIN
0 PLAIN 4 PLAIN
0 PLAIN 5 PLAIN
10 PLAIN A1 PLAIN
10 PLAIN A2 PLAIN
10 PLAIN A4 PLAIN
10 PLAIN A6 PLAIN
10 PLAIN A7 PLAIN
2 M3104 2 M3104
2 SE D1 SED
2 SE D2 SED
2 SE D5 SED