Sure. The Toad DataPoint Workbook interface allows you to save all of your queries, how they flow together, and other artifacts (like pivot tables off the queries, report output, etc.) in one "container" called a Toad Workbook File (.twf). The interface is shown in the first screen snapshot below.
The "Classic" Toad DataPoint interface is very similar to other Toad flavors (like Toad for SQL Server, Toad for DB2, etc.) and is shown in the second screen snap below. TDP Classic allows you to save your queries and other artifacts separately, as needed.
TDP Workbook Interface:
TDP Classic Interface:
May I suggest that you can contact your sales account manager, and s/he can schedule you for a complimentary one-hour with a product specialist?